Japanese encephalitis


updated 24th May 2022

Information from the Department of Agriculture, Water and Environment about Japanese encephalitis in Australia.

Current Situation

  • 79 infected piggeries have been reported, in QLD (17), NSW (30), Victoria (22) and SA (9).
  • Also, 35 feral pigs in five local government areas of the Northern Territory have tested positive to Japanese encephalitis (JE).
  • South Australia recently reported a rare case of Japanese encephalitis in one alpaca.

  • NSW Department of Primary Industries has detected evidence of infection with Japanese encephalitis (JE) virus in horses from several Local Land Services regions across NSW (North Coast, Hunter, Greater Sydney, Central West, Riverina, and South East regions). Testing of horse serum samples in NSW has identified twenty-six horses with probable Japanese encephalitis (JE) infection and four horses as possible JE cases. These horses were probably exposed to JE virus during peak mosquito activity over summer to mid-autumn 2022. JE has not been definitively confirmed in any NSW horses. However, the combination of clinical signs and test results suggests that Japanese encephalitis infection is a probable or possible cause of the disease.

  • There have been 13 JEV detections in mosquito samples collected since 30 December 2021 in VIC (7), NSW (3) and QLD (2). The most recent detection was in a mosquito trap collected in QLD on 19 April 2022. The primary mosquito vector is suspected to be Culex annulirostris.

  • All affected jurisdictions have moved from emergency response to disease management programs and are no longer producing situation reports.
  • Jurisdictions are also moving to resolve infected premises in line with guidelines previously endorsed by the Consultative Committee on Emergency Animal Disease (CCEAD). As this involves a risk assessment of factors such as mosquito activity and control, the resolution of premises will differ across jurisdictions.
  • The latest national human health information relating to JE can be found at health.gov.au. The department also has free public resources that can be downloaded from their website.
  • State and Territory Public Health units are co-ordinating and implementing the priority vaccination program, with initial vaccinations underway, and it is expected they will be free.
    • The immediate priority groups for vaccination against JEV are individuals in affected regions with:
      • direct exposure or close proximity to pigs and mosquitoes; and
      • high-level occupational exposures, including veterinarians who work with piggeries.
    • Japanese encephalitis virus is a nationally notifiable disease which means if you suspect an animal is showing signs of the disease, you must report it. You can do this by calling the national Emergency Animal Disease Watch Hotline on 1800 675 888. This will put you in touch with your state or territory’s agriculture department.
    • Australia has national plans in place to respond to animal disease incursions. The Japanese Encephalitis AUSVETPLAN outlines the principles for responding to this disease. 
    • Information about this disease incursion is available here. 
  • How to identify the disease in animals

    • Japanese encephalitis virus is not spread directly from pigs to people and spread from pig to pig through genetic material such as semen is rare. The virus is primarily spread by mosquitoes.
    • In pigs, the most common clinical signs are mummified and stillborn or weak piglets, some with neurological signs.
    • Piglets infected after birth can develop encephalitis which presents as paddling or other neurological signs in the first six months of life. In other cases, wasting, depression or hindlimb paralysis may be seen in suckling piglets and weaners.
    • Adult sows do not typically show overt signs of disease. If boars are present on farm, they may experience infertility and oedematous, and congested testicles.
    • Pigs may also rarely become infected by direct contact between pigs or by infected pig semen.
    Disease prevention in pigs
    • Pig producers are asked to be highly vigilant for signs of this disease and report unexplained pig abortions or stillbirths.
    • Many piggeries operate under the national Australian Pig Industry Quality Assurance program which sets high biosecurity and hygiene standards for commercial piggeries.
    • People working with pigs, including those who may have a small herd or pet, should take steps to control mosquitoes, as well as of course continue to use effective biosecurity measures.
    • Key measures that will help reduce the mosquito load around piggeries include:
      • Monitoring for mosquitoes at the various stages of their lifecycle. This can help determine the most effective control methods of and help break the breeding cycle.
        • To monitor, inspect bodies of water and containers for wrigglers, as well as areas where adult mosquitoes will rest like ceilings and walls. 
      • There are non-chemical measures that can be used including removing anything in the open that is filled with water or has the potential to hold water.
        • Fill in potholes or other areas around the piggery that collect water.
        • Clear debris from gutters, downpipes, and drains around buildings so that water doesn’t pool, and trim overhanging tree branches.
        • Ensure effluent drainage is free flowing, flushed regularly and does not pool.
        • Tanks, wells or other large water containers should be sealed, or screened with 1mm mesh.
        • Reduce vegetation around the piggery to minimise areas where adult mosquitoes can rest.
        • Ensure all windows and doors are covered by well-maintained mosquito proof screens
      • If you are opting for chemical control, be aware that:
        • chemical residues in pork are a trade and food safety risk.
        • chemicals must only be used in accordance with the directions on the label.
        • chemicals must be registered for use around pigs and buildings that house animals and must be approved for use against mosquitoes. They should only be used in areas that require treatment.
        • treatment should be applied by people authorised to use chemicals in accordance with state or territory training and licensing requirements. 
        • chemical control can be applied to water sources, the outside of sheds and buildings, effluent ponds, staff facilities and pigs.
      • State agriculture departments continue to support property owners with mosquito management, including those with infected herds.
    • You can find out more at farmbiosecurity.com.au which has detailed information about controlling mosquitoes in piggeries, ( and a shorter fact sheet)as well as the National Pork Biosecurity Manual which provides in-depth detail on biosecurity practices and management in piggeries.
    • In horses many cases are subclinical, meaning that they can be infected but now show signs of the disease. Most clinical disease is mild, however more severe encephalitis can occur which may be fatal.
    • Signs include an elevated temperature, jaundice, lethargy, anorexia and neurological signs which can vary in severity.
    • Neurological signs can include incoordination, difficulty swallowing, impaired vision, and rarely the horse becomes over excited.
    • While reports of the disease in other species are rare, overseas the disease has been reported in donkeys.
    • Horses (like people) are known to be a ‘dead end host’. Unlike pigs and waterbirds, the level of virus circulating in infected horses’ blood is too low to reinfect mosquitoes.
    • Agriculture Victoria has provided a comprehensive JE Investigative Procedure for Horses at THIS LINK.  It includes Sample collection, Packaging of samples, Transport, Sample submission, Diagnostic tests, Notes on testing, Disease notification and Significant Disease Investigation (SDI) Program.

    Disease prevention in horses
    • Horse owners can also put measures in place to help their horses avoid mosquito bites. Put a hooded rug on them, a fly mask, and if the horse allows, apply a safe insect repellent. Do not apply the repellent around or above their eyes.
    • The Australian mosquito that transmits JE feeds at night and is reluctant to enter dwellings, so stabling horses between dusk and dawn is beneficial.
    • Rugging and hooding along with applying an insect repellent may help protect horses that cannot be stabled. Note that permethrin treated horse fabrics which are sold with claims of insect control are viewed as unregistered agricultural chemical products under current legislation. Their supply and use in Australia have not been approved at this time.
    • Work is underway to develop specific advice for horse owners on how to manage mosquitoes around horse facilities including in stables and equestrian venues. In the meantime, there is further advice on protecting stabled horses in the JE AUSVETPLAN Response Strategy

Agriculture Response

  • JE has been confirmed in pigs in Victoria, New South Wales, South Australia and Queensland.
  • A working group has been established to identify when infected piggeries can be considered resolved.
  • The AUSVETPLAN Response Strategy recommends a minimum of 42 days from the introduction of infection to the premises to allow for sufficient immunity to develop in all susceptible animals on the premises.
    • Remember, it runs through 20% of the herd on the first wave and then 1-2 weeks later runs through the remainder of the herd.
    • Movement controls have been applied to infected pig properties, which include strict mosquito controls to allow essential pig movement to occur in a safe and controlled manner.
    • State and territory animal health authorities have implemented biocontainment measures at affected piggeries focussing on:
      • Movement controls over pigs, semen and embryos to minimise the spread of infection.
      • Tracing and surveillance to determine the extent of infection.
      • Epidemiological assessment to inform decisions on appropriate control measures and to establish the potential role of mosquito vectors and reservoir host species in the transmission of JEV in Australia.
      • Working with the pig and horse industries to implement appropriate vector control and management areas (including trapping and sampling) while national guidelines (see below ) are being developed
    • Mapping of infected piggeries and suspected infected piggeries is being shared across jurisdictions and with state human health authorities. This will include development of geospatial maps to indicate potential high risk transmission areas across jurisdictions including map of where piggeries are located and the potential role of waterfowl, feral pigs (working with the national feral pig coordinator ) and vectors.
    • Retrospective testing of stored samples from domestic and feral pigs, horses, wildlife and mosquitoes are being tested for JEV. Results pending
    • Retrospective testing of vectors collected over the past 12-18 months from broader geographical areas is also underway – results pending including analysis on vector competence.
    • A longer term animal surveillance plan for JEV is being developed that will include surveillance of susceptible species, including pigs (feral pigs included), horses and other animals.
    • In conjunction with human health authorities and the pig industry, mosquito trapping and control is being conducted at all infected premises.
    • In addition to movement restrictions applying to infected piggeries, there are some additional interstate movement conditions for live pigs and pig semen moving from infected areas to uninfected jurisdictions. Check with your state or territory agriculture department.
  • That will keep producers, workers and communities that live near piggeries or areas where waterbirds congregate informed about where risk areas are, and what they need to do to protect themselves.
  • Surveillance allows identification of infected properties quickly and minimisation of further spread of the virus, by controlling mosquitos on farm, and careful management of movement of pigs from infected properties. Surveillance testing continues until the property can be declared free.  
    • Surveillance and tracing has already been undertaken across all infected piggeries by state and territory agriculture departments.
    • Mapping of piggeries and suspected infected piggeries is being shared across jurisdictions and with state human health authorities.
    • This will include maps of where piggeries are located and the potential role of waterfowl, feral pigs and vectors.
    • Lastly, we have established a consistent cross-government communication strategy with DAWE/Dept of Health.
  • Anyone who works with pigs or horses should protect themselves from being bitten by mosquitoes.
  • The Department of Agriculture, Water and the Environment is working closely with the APVMA to obtain an emergency use permit for vaccination of horses with JEV vaccines sourced from international suppliers.
  • Information about this incursion will be updated at outbreak.gov.au

Exports and trade

  • The Department of Agriculture, Water and the Environment provides the certification for live animals, meat and meat products for export to overseas markets.
  • The department is working with horse exporters to ensure horses meet importing country requirements for Japanese encephalitis. There are 12 markets that Australia exports horses to that have import requirements in place for this disease.
  • The department has worked closely with New Zealand authorities to negotiate the entry requirements for Australian horses travelling to New Zealand.
  • The department will work with trading partners should any other issues arise around the export of pig meat, offal and pet food, due to this outbreak.

Alerts as PDFs

Emergency animal disease alert for veterinarians_approved.pdf

Emergency animal disease alert_horses_approved.pdf

Emergency animal disease alert_pigs_approved.pdf

Images (credit: Stephen L. Doggett, NSW Health Pathology)